rs50963859 SNP Detail

Summary

• ID
  rs50963859
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66136120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTGGGGT CCGGGGCAGG
  GACTGGAGAC AGAGGCGGGG ACAGGGGCGT GGACGGGGTC AAGGACGGAT ACTCGGTATA
  GTAGAGGTGC GGTGTGTCCA GCTCTGTAGT GCCTTTGGGG GAAGGTGATT ACCATTTTTT
  CCTACTACCA AGTATTTCAA GTTCCAGAGT AGCAGACTAT CTTCTGTGAC TTAGAAAACC
  W
  TGGAAGCCCT AAGACTTGTG GAACCAGCCC ATAATAAACT AATAAATAAA GGCATCTACT
  ATTCAGTGGC TGGCTTTTGT TTTGTGAACT TTCCAGAAAT GATTACCCCA CCAAGAGTCT
  CAGCCCACGG AGAGCATCTC AAAAGAGCCC TAGGACCTTT TAGGTGGTCG AATTAAGAGG
  TTTGTGCCAA ATCAACTTTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63157214	NES17452168	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50963859					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63157214	NES17452168	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66136120 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10156	CpG island 10156	119 bp distal
Lman1	lectin, mannose-binding, 1	414 bp upstream
Rr353056	regulatory region 353056	within coordinates
Rr355117	regulatory region 355117	882 bp proximal
Rr405704	regulatory region 405704	201 bp downstream
Tssr153727	transcription start site region 153727	412 bp upstream