rs50964933 SNP Detail

Summary

• ID
  rs50964933
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121138602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTAGCTC AGTAAGCCTG
  GGTCCTGCTG GACTCACAGA TGGTTGCCAG CCAAACAGGC CCTTCTGTAC CTACCCGGCT
  GGAAGCTGCT AGTGGAGAAG ACGCCTTCAA TGCTCAAACA ACCCCTTTGC CTGTGGAAGG
  AATTGTCTGT GGCCTACACT GTTTTCAGCT AGCATGTTGG CACCCAGCCT GCCGGTAACT
  Y
  TTCATATGTT CTGTGTATTT GCATAGTTTG AATTTGGCTC CGTTTTGTTG TTTGAGACAG
  GATCCCCCAC TATATAGCCC AGGCTAGCCT AGAACTTAAC GACTCCTCTG CTTCGCCTCC
  TGAGCACTGG GAGTACAAAC CACAACTTCT GACATTCTTT TGGGTTGAGG ATACACCTGA
  CATCGTTTTG ACAGGAAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135718928	ENSMUSSNP2056362	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50964933					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121138602 () rs orientation: forward

Symbol	Name	Function Class
Alg14	asparagine-linked glycosylation 14	within coordinates
Gm33310	predicted gene, 33310	within coordinates
Gm66111	predicted gene, 66111	1591 bp upstream
Rr367544	regulatory region 367544	67 bp upstream
Tssr35413	transcription start site region 35413	1616 bp upstream
Tssr35414	transcription start site region 35414	1582 bp upstream