rs50965140 SNP Detail

Summary

• ID
  rs50965140
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46047144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGATC TTTCTGTCTC TGGTTGGGGC
  G
  GGGGTGGGGG TGGGAGCTGA TACTG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145695624	ENSMUSSNP3201309	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss325403990	CHEV_17_45873167	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50965140					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46047144 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9207	CpG island 9207	1927 bp distal
Cpgi9208	CpG island 9208	120 bp proximal
F630040K05Rik	RIKEN cDNA F630040K05 gene	within coordinates
Rr392669	regulatory region 392669	within coordinates
Rr527526	regulatory region 527526	1621 bp distal
Rr527527	regulatory region 527527	568 bp distal
Tssr144810	transcription start site region 144810	1588 bp downstream