rs50965146 SNP Detail

Summary

• ID
  rs50965146
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:131454291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CTAGGCCGCC CTGTCCCCGC CGGCGCACAA GCGGCTCCAG
  GCAGTGTCGC CTACTCCCGG CGGCTGGAGG AAGGGCCGCG CGCAGGAAGA GCGAGCAGAG
  G
  CCGCGCGGTG CGGGAGGACA GGAAGCAGGA GGCGGGCGTG AGGTGGGGTC CTGAGGCAGG
  AGAGAGCCCG GGCCAGCTCG AGCCGCCCAA GCTTGGACGA C                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145478722	ENSMUSSNP6210272	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50965146					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131454291 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fam72a	family with sequence similarity 72, member A			1350 bp upstream
Gm70877	predicted gene, 70877			71 bp upstream
Rr396286	regulatory region 396286			729 bp upstream
Rr396287	regulatory region 396287			1040 bp upstream
Rr418128	regulatory region 418128			1420 bp distal
Rr418129	regulatory region 418129			within coordinates
Rr418130	regulatory region 418130			304 bp distal
Rr418131	regulatory region 418131			82 bp proximal
Rr418132	regulatory region 418132			784 bp proximal
Rr418133	regulatory region 418133			1581 bp proximal
Srgap2	SLIT-ROBO Rho GTPase activating protein 2			Intron
				Noncoding-Transcript-Variant
Tssr8627	transcription start site region 8627			1274 bp downstream
Tssr8628	transcription start site region 8628			1100 bp downstream
Tssr8629	transcription start site region 8629			1305 bp upstream
Tssr8630	transcription start site region 8630			1348 bp upstream
Tssr8631	transcription start site region 8631			1427 bp upstream
Tssr8632	transcription start site region 8632			1808 bp upstream
Tssr13589	transcription start site region 13589			1391 bp upstream
Tssr13590	transcription start site region 13590			1321 bp upstream
Tssr13591	transcription start site region 13591			1294 bp upstream
Tssr13592	transcription start site region 13592			1202 bp upstream
Tssr13593	transcription start site region 13593			1125 bp upstream
Tssr13594	transcription start site region 13594			1015 bp upstream
Tssr13595	transcription start site region 13595			968 bp upstream
Tssr13596	transcription start site region 13596			935 bp upstream
Tssr13597	transcription start site region 13597			706 bp upstream
Tssr13598	transcription start site region 13598			5 bp upstream
Tssr13599	transcription start site region 13599			3 bp downstream
Tssr13600	transcription start site region 13600			172 bp downstream
Tssr13601	transcription start site region 13601			713 bp downstream
Tssr13602	transcription start site region 13602			749 bp downstream
Tssr13603	transcription start site region 13603			970 bp downstream