rs50965227 SNP Detail

Summary

• ID
  rs50965227
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:81009907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATATGAAGG ATAAAGACAT TTTTTCAAAT TTTGAAAAGT
  TTGCTAGTTT CTCAAAAACG AAACTTATCT AAACGTATAA AGCATTATGT CGCAGGACAT
  S
  ACATGTATTA ATACATTTAT CATAGTTTCT GTTTGTGGAA CTCTAAAAAG GCCTTTCTAC
  ATATAATTTT CTCATTCACA TGAAACACAT CCATACCATA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	DBA/2J	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss62938453	NES17404139	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	DBA/2J	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs50965227					SNP	C	C	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62938453	NES17404139	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:81009907 () rs orientation: forward

Symbol	Name	Function Class
Gm66613	predicted gene, 66613	440 bp upstream
Map4k3	mitogen-activated protein kinase kinase kinase kinase 3	within coordinates
Rr343206	regulatory region 343206	507 bp distal
Tssr149503	transcription start site region 149503	1699 bp upstream
Tssr149504	transcription start site region 149504	458 bp upstream