rs50965630 SNP Detail

Summary

• ID
  rs50965630
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:62021637 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGACACAC CAGAACAGGG
  TGGGTGTCCA TTACAGATGG TTGTGAGCCA CCATGTGGTT GCTGGGAATT GAACTCAGGA
  CCTCGGAAAG AGCAGTCAGT GCTCTTAACC GCTGAGCCAT CTCTCCAGCC CCCACATTTT
  TCTTGTAACA AAAATCTTCA AAAACTGAAG AGTGAAGAAA GGGACTAATT TTGAGGGTCA
  Y
  TCTGTTGGGT TTTTAGAAAA TATTTAATTA TTTTATTTAT GAATACACTG TCGCTGTCTT
  CAGATGCACC AGAAGAAGGC ATCGGATCCT GTTACAGATG GTTGTGAGCC ACCACGTGGC
  TGCTAGGGAT TGAACTCAGG ACCTCTGGAA GAGCAGTCAG TGCTCTTAAC CACTGAGCCA
  TCTCTCCAAC CCCTTGAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61279724	NES16893296	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50965630					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61279724	NES16893296	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:62021637 () rs orientation: forward

Symbol	Name	Function Class
Rr215629	regulatory region 215629	764 bp proximal
Rr219987	regulatory region 219987	1764 bp proximal
Rr228219	regulatory region 228219	1983 bp distal
Rr228220	regulatory region 228220	486 bp proximal
Tspan15	tetraspanin 15	within coordinates
Tssr97791	transcription start site region 97791	1628 bp downstream