rs50966171 SNP Detail

Summary

• ID
  rs50966171
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:59037085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTATAACT CGATTACTGC
  CCTTATTATG TAAACATCCA GCTAAAGGGC TAGCCAGTTC TGCACAGTCT TGCATTTCTC
  TCCTATTCAT GCATAAATTA CATTTTTTAT TAGTCATAGT CATTGTATGC TAGAGACAAG
  GAAATAGATT GGGAGCCGGA TGGTTTCTCT GAGTACTAGT CTTGCCCTTT AATTAGACAA
  R
  TCACCTTGAC TCTGAAACTT GCTAAACTCA GTTTCAGATT GGTAAGACAG AGACATACAG
  AGATTTTTTT TTCCAGTGTC CCCTGCCTAT TCGGAACACC CAGTGACCTG ACGATCTGAC
  AGCATGTGTT CCAAGTCTTA AAGGTGGAGG ACAGTAACCT ATGAGCTCAG TGCATGGACC
  TGTTAACTAG AAATCCTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60415194	NES15910254	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50966171					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60415194	NES15910254	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:59037085 () rs orientation: forward

Symbol	Name	Function Class
Med12l	mediator complex subunit 12-like	within coordinates
P2ry14	purinergic receptor P2Y, G-protein coupled, 14	within coordinates
Rr577320	regulatory region 577320	822 bp proximal
Rr577321	regulatory region 577321	948 bp proximal
Rr577322	regulatory region 577322	1352 bp proximal
Rr577323	regulatory region 577323	1653 bp proximal
Tssr33381	transcription start site region 33381	867 bp downstream
Tssr33382	transcription start site region 33382	910 bp downstream
Tssr33383	transcription start site region 33383	946 bp downstream
Tssr33384	transcription start site region 33384	965 bp downstream
Tssr33385	transcription start site region 33385	982 bp downstream
Tssr33386	transcription start site region 33386	1016 bp downstream
Tssr33387	transcription start site region 33387	1086 bp downstream
Tssr33388	transcription start site region 33388	1398 bp downstream
Tssr33389	transcription start site region 33389	1419 bp downstream
Tssr33390	transcription start site region 33390	1458 bp downstream
Tssr33391	transcription start site region 33391	1563 bp downstream