rs50966219 SNP Detail

Summary

• ID
  rs50966219
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119908073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTCCCAGAG TTCAGCAGAT CTCCTGTCCA CCTGCAGCTC
  CCCAAGCTGG TGAGTGACAG CCTCCACCCC CTGCAGCAGA CTCAGCACAG CCTTTGAGTC
  Y
  TCCATGCGCT TCCTCTCCTC CTGTAGACAC CGTAGGAGCC TCCGCCAGCG CCCCGTGATC
  TCCTTCTGCC TAGATAATAA GAGGAAAAGG TAGTCTGCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147350707	ENSMUSSNP660004	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320478763	CHEV_2_119903328	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50966219					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119908073 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12136	CpG island 12136	843 bp distal
Sptbn5	spectrin beta, non-erythrocytic 5	within coordinates