rs50966404 SNP Detail

Summary

• ID
  rs50966404
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185415521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACACACGC TCTCACACAC
  ACAGAGCACA CACAGAAAGG ATGCTCTCTT GTAGAGTAAC CAGAGTTCTG GCTGAATCAG
  TGGAGGATTT AGAACAAAAC TCGTAGTTGG CCTAGGACCA GCCAGAGTCA AGCTCCCGGG
  CCTCCCAGGT GGTGTGGCCA GTCACTCCTG AGAGGGTAGA AGAAGACAGG GATGCCCTGG
  Y
  GTTGGGATTC AGAGATGTGC ACTGAGGAGC TCTGCTTTCC CATTTATTGT TTAATCTCCC
  AGGCATGTGT TTCTTCATTT GTAGGGTGGC AATTCTTATA TTTGAGTTGT TTGAGGCTTA
  AGAAAATGTA TGAGGAACGT TTATAATCTA AGTGTGAAAA CAACCCAAAG ACAAACCTCA
  CCTTCCCAAG CATAGCTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146440026	ENSMUSSNP3053519	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320178615	CHEV_1_187507203	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50966404					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185415521 () rs orientation: forward

Symbol	Name	Function Class
Rr425420	regulatory region 425420	764 bp distal
Rr425421	regulatory region 425421	1216 bp distal
Rr425422	regulatory region 425422	1474 bp proximal
Rr425423	regulatory region 425423	1662 bp proximal