rs50966536 SNP Detail

Summary

• ID
  rs50966536
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:15149344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGG GGTGGGGGGG TCAGAAGCAC
  Y
  GAGGGAAAAC CATGAGTGGG AAGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss146047823	ENSMUSSNP54360	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss321047416	CHEV_4_15076491	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50966536					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:15149344 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14054	CpG island 14054	75 bp distal
Necab1	N-terminal EF-hand calcium binding protein 1	within coordinates
Rr100616	regulatory region 100616	within coordinates
Tssr40968	transcription start site region 40968	392 bp upstream
Tssr40969	transcription start site region 40969	372 bp upstream
Tssr40970	transcription start site region 40970	335 bp upstream
Tssr40971	transcription start site region 40971	299 bp upstream
Tssr40972	transcription start site region 40972	274 bp upstream
Tssr40973	transcription start site region 40973	411 bp downstream