rs50966685 SNP Detail

Summary

• ID
  rs50966685
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5915570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGCTGCT GGTGGGCGCC
  CTCAGTCGAT CAGCACTGGG AGGGAGCCAG GACCCCCCCA GGATGCGGTC ACAAGCAAGA
  CAGTCCTCAC TTCCTAGATT CTTGTCTCTA AGGAATTGGG TCTTTTTTGG AGTTCAGAGT
  AGAATCTTAA AAGACTGGAC ATTTGAATCA GATGAATGGT TCATGCTTTC AGATTAAACA
  R
  GAGGCCAGAT CACATTCTCC ATGGATACCC AAACCTTCAC CCACTGGGTG CTCATTTCCC
  ATTGTCCCAT GCATCGTGCT ATGTTGGGTT GCACCTCTTT CTTTGTCATG TAAGTGCAGG
  CTCAGGACAG ACACTCCTTG GGCAGCCTGA AGTTTGCTGA TGTTGACAGT GGTATTTTGA
  AGCCTCAGAG TGAGCAAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52612669	NES15506747	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A		A	G	A	A		A
ss324224100	CHEV_13_5864817	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50966685					SNP	G	G	G	G	G	G	A	G	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52612669	NES15506747	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5915570 () rs orientation: forward

Symbol	Name	Function Class
Klf6	Kruppel-like transcription factor 6	within coordinates
Rr403559	regulatory region 403559	730 bp downstream
Tssr118246	transcription start site region 118246	1745 bp downstream
Tssr118247	transcription start site region 118247	1675 bp downstream
Tssr118248	transcription start site region 118248	1074 bp downstream
Tssr118249	transcription start site region 118249	869 bp downstream
Tssr118250	transcription start site region 118250	803 bp downstream
Tssr118251	transcription start site region 118251	768 bp downstream
Tssr118252	transcription start site region 118252	710 bp downstream
Tssr118253	transcription start site region 118253	839 bp upstream
Tssr118254	transcription start site region 118254	866 bp upstream
Tssr118255	transcription start site region 118255	1996 bp upstream
Tssr121319	transcription start site region 121319	1257 bp upstream
Tssr121320	transcription start site region 121320	1220 bp upstream
Tssr121321	transcription start site region 121321	1209 bp upstream
Tssr121322	transcription start site region 121322	1168 bp upstream