rs50967621 SNP Detail

Summary

• ID
  rs50967621
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:129062079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A AGGCCCAGGT TCATCTTCAG AGCTCCCAGG CAGGAAGTGT
  GAGCTCCCAG GCAGGAAGGG TGAGCTCCCA GGCAGGAAGT GTGAGCTCCC AGGAAGGAAG
  K
  GTGAGCTCCC AGACAGGAAG TGTGAGCTCC CAGGCAAGAA GGGTGAGCTC CCAGACAGGA
  AGTGTGAGCT TCCAGGCAGG AAGGGTGAGC TCCCAGTTAG G                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss144458693	ENSMUSSNP5117739	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50967621					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:129062079 () rs orientation: forward

Symbol	Name	Function Class
Rr116326	regulatory region 116326	1922 bp proximal
Rr127046	regulatory region 127046	1479 bp distal
Stx2	syntaxin 2	within coordinates