rs50968095 SNP Detail

Summary

• ID
  rs50968095
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127431843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAAATGCTG GGATATACTA GTATACCTGA CATTAATAGT
  GTTCCTTGAA ACACAGGTTT TTGTTTTTGA GCATCCAGGG CCTAGTGCAC ATCAGGCAAG
  W
  GCTGTGCCGC CAAGCTGTTT CTAGCATTGA ACACATTGGT TTGAAATTTT GATGGTCTCA
  TTCATCTGTT TTCCCCCTCT CCCTTTTGGT AGCATGTGC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147535440	ENSMUSSNP997251	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50968095					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127431843 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12227	CpG island 12227	1899 bp distal
Mrps5	mitochondrial ribosomal protein S5	Intron
Rr564565	regulatory region 564565	1813 bp distal
Rr564567	regulatory region 564567	1330 bp distal
Rr564568	regulatory region 564568	151 bp proximal
Tssr20027	transcription start site region 20027	398 bp upstream
Tssr20028	transcription start site region 20028	819 bp upstream