rs50968629 SNP Detail

Summary

• ID
  rs50968629
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:177992502 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      T CCTGATGATT GAAACCAGGA TAAGTATACC TTTATGGGCC
  ATAGTAAGAT CATGGCCAGT ACCTTTACCG GTACATTCCA ATTCTTCTAC CTAGCCTTTG
  W
  TTTTTGCAAA GGAATGTTTT TTGGATGTGC CTTATGCACG ACAAACTCCT CAAGAGCCAC
  GGGTGTATAA GAGTACTAGT TTTCATTTAA ATTATACATT A                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss138991207	ENSMUSSNP6439725	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss149068144	ENSMUSSNP3383217	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50968629					SNP	?	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177992502 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Catspere2	cation channel sperm associated auxiliary subunit epsilon 2			Intron
				Noncoding-Transcript-Variant
Gm69636	predicted gene, 69636			within coordinates