rs50969509 SNP Detail

Summary

• ID
  rs50969509
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122968750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCAGTTAT TTCAACAGTG
  TAAGTTTGTG CTTTTATTTT TCTGTTACTT GAAATGTTCA TACTATTAGT AAATTATGTA
  TCCTAGACAA AATGGGAAAA AAGAAGTGTG GAAAAGAAGA AACAAGGATG GACTTATTTC
  TCATGAAATG AATGTGCTTC TCCTTCTAGC TCCCAGAGAG AAACCTATCC GTGATCTAAG
  W
  AAGCCTGGTT CCCCCTCACT GCTTCTTACA TCCCTGATGC TACTTCTCCT GCTGCTGGCA
  ATCACATTCT TAGTTGCTTT TATCAGTAAG TATCCTGCAC ACATCAATGG GCCTTGTCTG
  CCTTAGATGA AGACAGGTTC CACTCTAGCA GTTGGCATTT AATGGAAATA TGAAGAAGAA
  ATATTCTTTG GTGAAAATTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60937733	NES16191453	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50969509					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60937733	NES16191453	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122968750 () rs orientation: forward

Symbol	Name	Function Class
Clec4a4	C-type lectin domain family 4, member a4	within coordinates
D6Mit300	DNA segment, Chr 6, Massachusetts Institute of Technology 300	335 bp distal
Tssr58744	transcription start site region 58744	1483 bp downstream
Tssr58745	transcription start site region 58745	1426 bp downstream