rs50970178 SNP Detail

Summary

• ID
  rs50970178
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:70347070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATCCCAT TTCATGGGAT
  TAAAAAAAAT TAATAACTGC TATGGAACAT TCCTAAGACA TATAGAGCTA AAATTTTTAC
  ATTTAAATAT TACTTTGGGC TCTTAATAGC CAACAAAATA AATTTATAGG CCCTATTTAA
  AAAAGAAAGG AGGAGGGCTG GAGAGATGGC TCAGTGGGTA AGAACACTGA CTGCTCTTCC
  S
  AAGGTCCTGA GTTCAAATCC CAGCAACCAC ATGGTGGCTC ACAACCACCC ATAATAAAAT
  CTGACGCCCT CTTCTGGTGC ATCTGAGGAC AGCCACACTT ATGTATAATA ATAAATAAAT
  CTTTAAAAAC AAAAGAAAGA AAGAAAAGAA AGAAAGAAAG ATGGAGTTGA GAGAGGGTGA
  TAGAAAAGAA ATGAAAAATC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss139680827	ENSMUSSNP490414	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50970178					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70347070 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bin3	bridging integrator 3			Intron
				Noncoding-Transcript-Variant
Rr494843	regulatory region 494843			61 bp proximal
Rr494844	regulatory region 494844			1350 bp proximal
Rr494845	regulatory region 494845			1444 bp proximal