rs50970904 SNP Detail

Summary

• ID
  rs50970904
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48655854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCTGGCC TTCCTGAAGA
  AGCGGAATGG GAGCACAGTC ATCGCAGATG ACACCCTTGC TGGAACCGTC ACCATCACTC
  TGAAGAACCT CCAAGCCGGT GACGCGGGCC TCTACCAGTG TCAGAGTCTC CGAGGCCGAG
  AGGCTGAGGT CCTGCAGAAA GTACTGGTGG AGGTGCTGGA GGGTGAGTAC ACAGTAGCTG
  R
  GTGCACCTTT GGCTGGTCCT TGTGCCAGGT CTTATTGTTG TGGGACTTTT TCAGGGGGAC
  ATAAATAAAT GCCTGTCCCA GATTAGCTAT CACAAACAGA TATAAGAAAT GATTCAGTCC
  AGGTCTAGCT TAGTGAATTC GTGAGTATAC TGGGGCTACT TGTAGGTGCC TGGCAAGGGT
  TTATTTACAG GCAATTCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss62767901	NES17350345	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A		G	G		G
ss325408126	CHEV_17_48488151	CHEVERUD	SCREENING_POP	f	SNP									A			G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs50970904					SNP	G	G	G	G	G	G	G	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62767901	NES17350345	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48655854 () rs orientation: forward

Symbol	Name	Function Class
Rr335234	regulatory region 335234	1853 bp distal
Trem2	triggering receptor expressed on myeloid cells 2	within coordinates
Tssr145097	transcription start site region 145097	1295 bp downstream
Tssr145098	transcription start site region 145098	953 bp downstream
Tssr145099	transcription start site region 145099	327 bp downstream
Tssr145100	transcription start site region 145100	301 bp downstream
Tssr145101	transcription start site region 145101	260 bp downstream
Tssr145102	transcription start site region 145102	146 bp downstream
Tssr148525	transcription start site region 148525	90 bp upstream