rs50970962 SNP Detail

Summary

• ID
  rs50970962
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:63281556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAATTCTC TACAGCCTTT
  AAAAGGGCTG AAGTAGAGCA AGTGTGGCGG AAGTTCTCAG ACAGCGTCCG CCAAGGAAAC
  AAGAGTCCAT GTCCACTGTG GGGTGGTCCA CATGGACCTG GAAGCCAGTG TCTGTAATGA
  TTCACAAGAC GCTTGCCACA GCAGTTACCA TGGAGAGTGG CCTCGCTCAG GGAAGCACAG
  W
  CTCCTTTCCA TTGCTGACTT TCACATGGAG TCCTGTTGCC ACAGGAGTGG TCACTAAATG
  ATGAGATTCA ATGAGACATA AGAGCCAAAT GCAGATGACA TTCTAAAGTA AGCTTCAGAG
  TTCTAAACCT CACACTGCTT GAATTCCAAC CTAACCATTT CCTCGTTAAA GCAACATGTT
  AAGTTGAATT TAGTCCAGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61818488	NES17756657	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	T	A	T	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50970962					SNP	A	A	A	A	T	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61818488	NES17756657	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:63281556 () rs orientation: forward

Symbol	Name	Function Class
Aopep	aminopeptidase O	within coordinates
Gm30409	predicted gene, 30409	within coordinates
Rr276922	regulatory region 276922	845 bp proximal
Rr276923	regulatory region 276923	1644 bp proximal
Rr284650	regulatory region 284650	45 bp proximal