rs50972678 SNP Detail

Summary

• ID
  rs50972678
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:103754877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAA TGGGACAAGC TAATAACTAG
  Y
  AGGTGATCAT CCTGAAGTGG CCTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135564796	ENSMUSSNP3505200	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320858690	CHEV_3_103651484	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50972678					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:103754877 () rs orientation: forward

Symbol	Name	Function Class
Bcl2l15	BCLl2-like 15	within coordinates
Tssr31007	transcription start site region 31007	743 bp downstream
Tssr31008	transcription start site region 31008	706 bp downstream
Tssr31009	transcription start site region 31009	696 bp downstream
Tssr31010	transcription start site region 31010	659 bp downstream