rs50972791 SNP Detail

Summary

• ID
  rs50972791
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:115050012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAA ACTAACCCAA GCCAGACATT
  Y
  CACCGAGACT CAGCGGTCCT GGACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss149118831	ENSMUSSNP789121	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss321653763	CHEV_5_115361960	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50972791					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115050012 () rs orientation: forward

Symbol	Name	Function Class
Oasl2	2'-5' oligoadenylate synthetase-like 2	mRNA-UTR
Rr618060	regulatory region 618060	1457 bp distal
Tssr48139	transcription start site region 48139	929 bp downstream
Tssr48140	transcription start site region 48140	895 bp downstream
Tssr48141	transcription start site region 48141	678 bp downstream
Tssr48142	transcription start site region 48142	588 bp downstream
Tssr48143	transcription start site region 48143	545 bp downstream
Tssr48144	transcription start site region 48144	505 bp downstream
Tssr48145	transcription start site region 48145	438 bp downstream
Tssr48146	transcription start site region 48146	372 bp downstream
Tssr48147	transcription start site region 48147	357 bp downstream
Tssr48148	transcription start site region 48148	291 bp downstream
Tssr48149	transcription start site region 48149	271 bp downstream
Tssr48150	transcription start site region 48150	258 bp downstream
Tssr48151	transcription start site region 48151	216 bp downstream
Tssr48152	transcription start site region 48152	158 bp downstream
Tssr48153	transcription start site region 48153	68 bp downstream
Tssr48154	transcription start site region 48154	52 bp downstream
Tssr52739	transcription start site region 52739	948 bp upstream