rs50973641 SNP Detail

Summary

• ID
  rs50973641
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:38703580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTATA CATAATGTTC
  CTTGTGTGAA TACACGAGCT ACACGGATAG TGTTGTTAAC TGTTGCATTA AGTTACGTTT
  GCATGAGGGA GAGTGGCCTT AGGCTTCCCA CAGTCTCCTT TGTGTAGGTC CTGAAGTCAC
  CGGCAAGGCC ACCCTCAGAT CCTCCCTGGG ACCTTGACTT GGGTTCTTTC ATTGAGGTAT
  W
  GCTGGTGACC TACATGAGGT TCAGACATAT TGCCTAAGAC CACTGGGCCC AATTGGCATC
  ACAGATGTAT GTGAGAACAT GTTTACCTCT AGATTGTGTC TTCTTTGCAT GCCACACATG
  CATACACACA CACACACACA CACACACACA CACACACACA CACACACACA CACGTTATGA
  CCTTCCCTGG TTATGTTCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60719311	NES16354856	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50973641					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60719311	NES16354856	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:38703580 () rs orientation: forward

Symbol	Name	Function Class
Aff3	AF4/FMR2 family, member 3	within coordinates
Rr366875	regulatory region 366875	469 bp upstream
Rr409724	regulatory region 409724	1380 bp distal
Rr409725	regulatory region 409725	within coordinates
Rr409726	regulatory region 409726	446 bp proximal
Rr409727	regulatory region 409727	1044 bp proximal
Rr409728	regulatory region 409728	1752 bp proximal
Tssr11346	transcription start site region 11346	423 bp downstream
Tssr11347	transcription start site region 11347	435 bp downstream
Tssr11348	transcription start site region 11348	448 bp downstream
Tssr11349	transcription start site region 11349	506 bp downstream
Tssr11350	transcription start site region 11350	524 bp downstream
Tssr11351	transcription start site region 11351	1093 bp downstream