rs50973683 SNP Detail

Summary

• ID
  rs50973683
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:94073143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATGCATG TATGATATGC
  ATGTATGATC TGTATGTATG TACTATATGT ATGTATGATA TGTATGTATA TGTATGCAGC
  ATATCTAAAG TAGATAGATC CACAAGCAGA ACATAGACTA GTGATGGGAA CAATTGTGAC
  AGCTGAAGGG AAGACAGTTT CTGAGGGGAG GATTGATAAC TGTAAAATGC TGGGCATGCA
  Y
  CAGAAACTGT TTAACTGGCT TGTACACAGT AGAAGGATGA GTCTTACAAC ATGTAAATTG
  CCTAGCAACT TTTCAAAAGA TCTGTGTGTG TATATGTGTA TGTGCACTGC TGCCTGCAGA
  GAGCAGAAGA GAGTATCAGA GCTCCCTGGA GCTGAAGTTA CAAGTGGTTG TACGCTGCCC
  TACTTAGGTG CTGTGAGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60515981	NES16526653	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50973683					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60515981	NES16526653	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:94073143 () rs orientation: forward

Symbol	Name	Function Class
D16Jhu35	DNA segment, Chr 16, Johns Hopkins University 35	1502 bp distal
Hlcs	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	Intron