rs50973983 SNP Detail

Summary

• ID
  rs50973983
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84391411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCTCTGGCT GTCCTGGAAC TCATTCTGTA GACCAGGCTG
  GCCTTGAACT CACAGAGATC CACCTGCATC TGCATTCACA GTGCTGGGAT TAAAGGTGTG
  Y
  GTCACCACTC CCTGCTCTCC CTGCTTTCTT GACACCAGAA ATGCAGAATG GCAATAATGC
  CTTCCCTTGG GCATCTCCCA CCTGAGGGGA GCCCTCTCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145359572	ENSMUSSNP2359408	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss322745391	CHEV_8_86188681	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50973983					SNP	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84391411 () rs orientation: forward

Symbol	Name	Function Class
Gipc1	GIPC PDZ domain containing family, member 1	88 bp downstream
Pkn1	protein kinase N1	1754 bp downstream
Ptger1	prostaglandin E receptor 1 (subtype EP1)	1896 bp upstream
Rr666278	regulatory region 666278	87 bp proximal
Rr666279	regulatory region 666279	1406 bp proximal
Rr666280	regulatory region 666280	1907 bp proximal
Tssr78279	transcription start site region 78279	1852 bp upstream
Tssr78280	transcription start site region 78280	1925 bp upstream