rs50974809 SNP Detail

Summary

• ID
  rs50974809
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:14618692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGGTTTTTT TTTTTTTTGT CATGGTAGGA ATAACGGTGC
  CTGTGTGCCC ACTTCCTCAC AGTACAGGGT GATGGAGCTG TCCAGGTGGT ACTTCAGTAC
  K
  TAAACTCAGC TCTGGGTGTT CACAATCTCT CACTCTTATT TCTAAAAGAA ACTTTATTTT
  AAAGTTTTTT TTTTTTGTTT TTCTAAAAAC ACTTGTTCCC                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60541465	NES16554264	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50974809					SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60541465	NES16554264	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:14618692 () rs orientation: forward

Symbol	Name	Function Class
4930474M22Rik	RIKEN cDNA 4930474M22 gene	within coordinates
Rr522524	regulatory region 522524	278 bp proximal
Smoc2	SPARC related modular calcium binding 2	within coordinates
Tssr5014	transcription start site region 5014	514 bp downstream
Tssr142738	transcription start site region 142738	597 bp upstream
Tssr142739	transcription start site region 142739	805 bp upstream
Tssr142740	transcription start site region 142740	830 bp upstream
Tssr146495	transcription start site region 146495	501 bp downstream