rs50975370 SNP Detail

Summary

• ID
  rs50975370
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141429301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTCTTTT TTTAACTATT
  ATACTTCTTA CATTTTAAAT TATAAGCAAT ATGTTGTTTA ATGTAGTATT TTACGATTTA
  AAAAAAAACA CAGATCTGGT TATCTGTTTT TGTGAGAGAA AGGAATTGAA AACTTTAGAC
  ACAGAGACAT TAAAGCAGGA ATATTTCACT GTTAATAAGT GGCCAAAGCT CTGAAGATTA
  R
  TCTAACTCTC TCCAAATATG CCCAATTGCT TGGTTCTCAG CACTTATATC CTGTTAACTG
  CTAAATTTTA TGATTTAAGA ATAAATTCTA CTCTACTGTG ACAAGATAAT TGGCCCCTTC
  CATCATCATT GGAGGACAGG TATGTTTTTT TCCTTTTAAA AATGTATTAA TGTCTAATGT
  GCCCGTGAAA TTCTTTTATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61091322	NES16613467	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A		G	A	A	G		A
ss320994739	CHEV_3_141386504	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50975370					SNP	A	A	A	A	A	A	A	A	A	A	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61091322	NES16613467	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141429301 () rs orientation: forward

Symbol	Name	Function Class
Unc5c	unc-5 netrin receptor C	within coordinates