rs50975788 SNP Detail

Summary

• ID
  rs50975788
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:28685337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGAAAAAAA AAAAAAAAAA AGTCCAGCAA TCAAGTGCAG
  AAGGCAGCAC GGACTTAAGC GTGAGACTGG CCTGCACTGG AAGTCCCTGT CTGCTGCCCT
  Y
  CCGTCTCTTG CCCCGGGAAT AGAGGCTGTC AACCACCCGT GGGCAGCGAG CGAGCGCACT
  CCGGGGTCCC CGCTCACCTT GGCTGCGGTG ATGTTGAGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss137502207	ENSMUSSNP4047684	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss323971714	CHEV_12_29320203	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50975788					SNP	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:28685337 () rs orientation: forward

Symbol	Name	Function Class
Gm53713	predicted gene, 53713	731 bp upstream
Rps7	ribosomal protein S7	Intron
Rr369505	regulatory region 369505	459 bp upstream
Rr464315	regulatory region 464315	509 bp proximal
Rr464316	regulatory region 464316	742 bp proximal
Tssr116014	transcription start site region 116014	98 bp upstream
Tssr116015	transcription start site region 116015	494 bp downstream
Tssr116016	transcription start site region 116016	505 bp downstream
Tssr116017	transcription start site region 116017	529 bp downstream
Tssr116018	transcription start site region 116018	553 bp downstream
Tssr116019	transcription start site region 116019	576 bp downstream