rs50976959 SNP Detail

Summary

• ID
  rs50976959
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117580523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGCCTAG AAAACTCTCT
  ACGGACACAG ACAAGTTATC AGAGGCCCAT GAGCAAGTCG TAACACCAAC ACTTCTTCTG
  AGTTTAAAAT ATGCACATCT GAATTTTTTT CATGTTCAAA AGTTTGGAAG TGTGTGTGTT
  TCACCCAAGT GACTTTATAA TCAAAGAGTA AATGACACAT GCGACCGATG AACTTAGGAA
  S
  CAAAACCTTA CTGCTCATTT TGTGAAGACT TCCAAGAAGT TTGTCCCCAG CTGCGCTTAA
  GCAGGGGTAC CGTGCGCTTA CAATTGGACA CTTGGTGGGC ATCGCACACC TGAGCTGCTG
  TCTCCTCTGC TCTCGTCACC TCCTCAGTTA CGCTTTCTTC TCATGTCTGT TGTCTCTATA
  CTTGTAGTCT CTAAACCTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss52226524	NES15328828	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		C	C		G
ss323499168	CHEV_10_117181674	CHEVERUD	SCREENING_POP	f	SNP							G			C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs50976959					SNP	G	G	G	G	G	G	G	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52226524	NES15328828	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117580523 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2238	CpG island 2238	975 bp proximal
Cpgi2239	CpG island 2239	1678 bp proximal
Gm66856	predicted gene, 66856	1863 bp upstream
Rr439608	regulatory region 439608	161 bp distal
Rr439609	regulatory region 439609	774 bp distal
Rr439610	regulatory region 439610	1324 bp proximal
Rr439611	regulatory region 439611	1737 bp proximal
Rr439612	regulatory region 439612	1874 bp proximal
Slc35e3	solute carrier family 35, member E3	within coordinates
Tssr99471	transcription start site region 99471	1713 bp downstream
Tssr99472	transcription start site region 99472	1738 bp downstream