rs50977454 SNP Detail

Summary

• ID
  rs50977454
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:28535453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAC ACACACACAC
  ACACACCACA TACATAACTG TACTCATAGA GACTTCCTTC TGTATCTGGG CCTTTGCCCT
  CTCTTCTCAC AGCATGCATG TACTCTCACC TTCTCTCTGA CATACTGGCA TCCAACTCTC
  CCCCCCCCCC ACACACACAC ACACTAACCT TTGGTCATAT TTGCAACCCA AAAATGTCTT
  T
  CTTGGTACGC TGAAGCACTG TAATCCTAGG AGAAAGTGGC TCCTCTCTCA ATTTTCAGCA
  AAGGGAGAAG TCTGTTAAAG GTTTCTTTCA ACACACCCAG AGACCAAGAC CCAGCTAGTC
  CTCCAATGCT TTCCACTGCT TACTTCAGCT TACAACCCTC CCAACCTTTC ACTTCAGATA
  ACTCAGTCCT TCCCCTGTAT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss131877122	ENSMUSSNP5066967	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50977454					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:28535453 () rs orientation: forward

Symbol	Name	Function Class
Ccdc85a	coiled-coil domain containing 85A	1129 bp upstream
Cpgi2667	CpG island 2667	1018 bp distal
Rr233134	regulatory region 233134	853 bp distal
Rr246448	regulatory region 246448	852 bp distal
Rr385862	regulatory region 385862	1678 bp downstream
Tssr107205	transcription start site region 107205	1348 bp upstream
Tssr107206	transcription start site region 107206	1224 bp upstream
Tssr107207	transcription start site region 107207	1144 bp upstream