rs50978054 SNP Detail

Summary

• ID
  rs50978054
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55206914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGT ATAAAGAGGA GACTTGGGGG
  G
  CCTGGGCTCT TCTTTCTTTG GCCTC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss139574360	ENSMUSSNP2554699	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss324641235	CHEV_14_55588294	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50978054					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55206914 () rs orientation: forward

Symbol	Name	Function Class
Mhrt	myosin heavy chain associated RNA transcript	within coordinates
Myh7	myosin, heavy polypeptide 7, cardiac muscle, beta	1227 bp downstream
Rr407057	regulatory region 407057	1674 bp distal
Rr492380	regulatory region 492380	652 bp distal
Rr492381	regulatory region 492381	204 bp proximal
Tssr125718	transcription start site region 125718	774 bp downstream
Tssr125719	transcription start site region 125719	682 bp downstream
Tssr125720	transcription start site region 125720	657 bp downstream
Tssr125721	transcription start site region 125721	645 bp downstream
Tssr125722	transcription start site region 125722	197 bp downstream
Tssr125723	transcription start site region 125723	155 bp downstream
Tssr125724	transcription start site region 125724	115 bp downstream
Tssr125725	transcription start site region 125725	710 bp upstream
Tssr125726	transcription start site region 125726	735 bp upstream
Tssr125727	transcription start site region 125727	768 bp upstream
Tssr125728	transcription start site region 125728	1576 bp upstream
Tssr128746	transcription start site region 128746	1482 bp upstream
Tssr128747	transcription start site region 128747	1458 bp upstream
Tssr128748	transcription start site region 128748	1414 bp upstream
Tssr128749	transcription start site region 128749	1383 bp upstream
Tssr128750	transcription start site region 128750	1361 bp upstream
Tssr128751	transcription start site region 128751	1355 bp upstream
Tssr128752	transcription start site region 128752	1296 bp upstream
Tssr128753	transcription start site region 128753	1097 bp upstream
Tssr128754	transcription start site region 128754	1027 bp upstream
Tssr128755	transcription start site region 128755	1258 bp downstream
Tssr128756	transcription start site region 128756	1275 bp downstream