rs50978617 SNP Detail

Summary

• ID
  rs50978617
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:8819347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAACTAGG TTATTTAGAT
  CAAGACACGG GACTGGGATT GTGGTTTAGT TGGTACAGTG TGTGTGCCTC ATACACAGAT
  CCCTAGATGC ATCCTCCAGC ACTGCATAGT CTGACTGGGG GGTGACAGAA CACGCCTATA
  ACCCCAACAC TCCGGAGTAT TGGGAGTATC AGAAGTTCAA GCTCATCCAC AAGCACATAG
  Y
  CAACTGGAGG CTAGCCTGGG CTACAAGAGA CCCTGCTTCA AAACATACAA CAAATTAGAT
  TAAGTTGTGC GCATAATCAT CTCTGTACAG CGAGCTGATC CGCATTCACT GTGCCTCTAG
  ATCTTAAAGC ACCTTCGCCA GTGGCCTTAG GTAGGTCAGG GATGGTTGTT CCAGGCCTGA
  TAGCCTTCCT TTCAGTCCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss146768435	ENSMUSSNP4924041	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs50978617					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8819347 () rs orientation: forward

Symbol	Name	Function Class
Gm48727	predicted gene, 48727	within coordinates
Gm67475	predicted gene, 67475	944 bp downstream
Rr427431	regulatory region 427431	1369 bp proximal
Tssr96665	transcription start site region 96665	1632 bp downstream
Tssr96666	transcription start site region 96666	1678 bp downstream