rs50979173 SNP Detail

Summary

• ID
  rs50979173
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:103830571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACAG GAAGCTTGAG TAAAACATGC
  R
  CATTGTAAGT TGTTTGTCTA AGTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss138011874	ENSMUSSNP2329830	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50979173					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:103830571 () rs orientation: forward

Symbol	Name	Function Class
Rr471835	regulatory region 471835	772 bp distal
Rr471836	regulatory region 471836	267 bp distal
Serpina1a	serine (or cysteine) peptidase inhibitor, clade A, member 1A	750 bp upstream
Tssr117529	transcription start site region 117529	1013 bp upstream
Tssr117530	transcription start site region 117530	682 bp upstream
Tssr117531	transcription start site region 117531	1360 bp downstream
Tssr117532	transcription start site region 117532	1414 bp downstream
Tssr117533	transcription start site region 117533	1446 bp downstream
Tssr117534	transcription start site region 117534	1462 bp downstream