rs50979550 SNP Detail

Summary

• ID
  rs50979550
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:104255592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGC TACGTGGAAA CCTGGGTGCT
  A
  ACAGTTTTGC CTCCTGCCCG AACTA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148950957	ENSMUSSNP6594621	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss321633672	CHEV_5_104536745	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50979550					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:104255592 () rs orientation: forward

Symbol	Name	Function Class
Gm26703	predicted gene, 26703	1491 bp upstream
Rr123937	regulatory region 123937	1008 bp proximal
Rr378391	regulatory region 378391	within coordinates
Sparcl1	SPARC-like 1	within coordinates
Tssr1563	transcription start site region 1563	754 bp upstream