rs50979900 SNP Detail

Summary

• ID
  rs50979900
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114295178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTCACCA GCCACCTTTG
  CGTGTGCCCG TCTACTTAGG CTCAGCCCCC TCTCCTCTCA CCACCTGCCT CTCCGGGTTA
  GTCTCCCTAC TGCTGTGTCT GATGCTGGAT GCTTTCTGAG AAAAAAAAAA AAAAGTTTAT
  TTAAACTCAA AGTTCTGGAG GTCAAAGAGC ATGGTCCTAG ATTCTGTTTG ACTCTGGTAA
  R
  AGCCTTCCAG TGGTCATAAG ATGGTAGATG GCCTCCTCGT GGGCACAAAT GAGGAGTGAG
  ACAGGAGGCC AGCGGGATTT GGGAGCCAGG CTTACTTTTT TCTTTTCTTT TTTTTTGGGG
  GGGGGGCAAC TCTTTCCCAC AAAGACCTCT GTCACCCGGA GACCAGCACT AGTCTTTTCT
  GGAGTAGGCT GTGTCTCCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60825939	NES16029809	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs50979900					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60825939	NES16029809	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114295178 () rs orientation: forward

Symbol	Name	Function Class
Acacb	acetyl-Coenzyme A carboxylase beta	within coordinates
Rr108154	regulatory region 108154	1978 bp distal
Rr108155	regulatory region 108155	223 bp proximal
Rr120008	regulatory region 120008	within coordinates
Rr120009	regulatory region 120009	128 bp proximal
Tssr48071	transcription start site region 48071	1684 bp downstream
Tssr48072	transcription start site region 48072	1650 bp downstream
Tssr48073	transcription start site region 48073	1602 bp downstream