rs50980547 SNP Detail

Summary

• ID
  rs50980547
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135637271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    caattaata taaataaatc tctttacatt
  aaccttaggc agactctttg gacaagggca aaagcaagaa cattcttcac taaaacatca
  taagaacgat cgctagagtt cagagtccaa atcaccttca gcacaaatgt cttccacatt
  Y
  ctactaggat ggccaattta agacccactt aaagcatccc ttggctttcc aaatccaaag
  tcccaaattc cacatccttc aaacaaaaac gtggtctaac ctagaacagc aataccctac
  tcctggtacc aactACTATC TTAGTTAGAG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145543496	ENSMUSSNP5406776	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss319992551	CHEV_1_137606110	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50980547					SNP	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135637271 () rs orientation: forward

Symbol	Name	Function Class
Gm57161	predicted gene, 57161	within coordinates
Rr419241	regulatory region 419241	849 bp distal
Rr419242	regulatory region 419242	1609 bp proximal
Tssr8966	transcription start site region 8966	1839 bp upstream