rs50980548 SNP Detail

Summary

• ID
  rs50980548
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:34416762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTAAAACAT GCTGGGTGAT AAGAGGAGCT GGTTTCAAAT
  GTAGAAAGGA AAAAGAAGAA AGCCTTGCAT TCTCCAATGG AGGATATAAA AAAAAGTCTA
  G
  ACCCACGGTG ACCTAGGAAA TAAATTGTTC TCTCTTACTG ACGGTTGGAC TCACTTTTCT
  AACTCAATTC AGTGGCCACC AGAAACTGCA AGCATATTT                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss149088189	ENSMUSSNP3735470	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss322573953	CHEV_8_35037206	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50980548					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34416762 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530006C21Rik	RIKEN cDNA 9530006C21 gene			1433 bp downstream
Rbpms	RNA binding protein gene with multiple splicing			Intron
				Noncoding-Transcript-Variant
Rr661901	regulatory region 661901			541 bp proximal
Rr661902	regulatory region 661902			1199 bp proximal
Tssr80880	transcription start site region 80880			737 bp downstream