rs50981826 SNP Detail

Summary

• ID
  rs50981826
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43922780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCAGCTC TGGAGGTTAT
  GCATTTTCGA ATGCAACCTG GGCCCTAGGA ATTCCATTAT CACTGTGATG ATTCTGTAAT
  TTGTGGCTCT GTGGTGCCAC CTAGCGGCCC TCGGCTGTTT AACATTCTTG ACAGTTTTCT
  TGTGGTTTTT ATAGGGCTTC AGAAAGACTT TGATCAGTGG GACCCTCTGG TGGAAGGAGA
  Y
  GATGAGAACC TGATTCCTGG GTCACCCTTT GACGCAGTCA CCCAGGTCCC GGCTCAGCAA
  CACTCTCCAG GATCACAGAC CCAGAATTAG AAGAACTTGC TTGTTACACA GTTGCCTTTT
  AAAAGTAGAG TGACATGAGA GAGAGAGAGA GAGAGAGCGC ACGCGCGCGC GCGCGCGCGC
  GCGAGCAATG TATTTACCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62746811	NES17342871	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	C	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50981826					SNP	T	T	C	T	T	C	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62746811	NES17342871	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43922780 () rs orientation: forward

Symbol	Name	Function Class
Pla2g7	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	within coordinates
Tssr144713	transcription start site region 144713	578 bp downstream
Tssr144714	transcription start site region 144714	493 bp downstream
Tssr144715	transcription start site region 144715	within coordinates
Tssr148139	transcription start site region 148139	138 bp downstream
Tssr148140	transcription start site region 148140	196 bp downstream
Tssr148141	transcription start site region 148141	244 bp downstream
Tssr148142	transcription start site region 148142	293 bp downstream