rs50982241 SNP Detail

Summary

• ID
  rs50982241
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:85919604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTCCTAG GCACCCTAGG
  CTTTTTTTTT CCTCCACATC TTCCTCTACC CTAGTAATAA TAATACTTAT TATGCTAACC
  TTTAACAAGA AGGAGTGACC CTCTGACCCT CTGCCACCTC ACAGGATGGA TTCAGGACGG
  GTGCGACCCA CTTCTAAAAC CTCCTCTGGT AGACATTAGC TCTGAACAGC CAAATGAGAG
  R
  CAACTGAAGT CTTACTGTGT TTAGGCATCC CGGCTGGCAT CCCGGCCACC ATCGTCCTGT
  GTTGGCCTGG GGCTCAGGAG AGAGCAGAAG CTCCGGTAGT TAACCTCGGG GGTCCTCTAA
  GCAAGCACCG TGAGCATTAG GGGGCGAGAC TCTCCTTCTT GGTGTCCCAG GCACAGCTGC
  ACTTACAACT GCAAACTAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62953711	NES17409447	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50982241					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62953711	NES17409447	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:85919604 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9587	CpG island 9587	480 bp proximal
Cpgi9588	CpG island 9588	1428 bp proximal
Gm55781	predicted gene, 55781	413 bp downstream
Gm55782	predicted gene, 55782	1206 bp upstream
Rr340290	regulatory region 340290	1203 bp distal
Rr340291	regulatory region 340291	within coordinates
Six3	sine oculis-related homeobox 3	1432 bp upstream
Six3os1	SIX homeobox 3, opposite strand 1	within coordinates
Tssr146084	transcription start site region 146084	1050 bp upstream
Tssr146085	transcription start site region 146085	1256 bp upstream
Tssr149705	transcription start site region 149705	155 bp downstream
Tssr149706	transcription start site region 149706	878 bp downstream