rs50983041 SNP Detail

Summary

• ID
  rs50983041
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:16680469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAT ATGGTGGAAG CTGTGAGAGA
  G
  GAAGAAGCCA GCAGGTGGGG CAGTG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148400049	ENSMUSSNP2293897	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss322112026	CHEV_7_17531893	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50983041					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16680469 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18406	CpG island 18406	779 bp distal
Cpgi18407	CpG island 18407	within coordinates
Gm71929	predicted gene, 71929	891 bp upstream
Pnma8b	PNMA family member 8B	Coding-Synonymous
Rr368243	regulatory region 368243	1887 bp downstream
Rr642822	regulatory region 642822	1852 bp distal
Rr642823	regulatory region 642823	1918 bp distal
Rr642824	regulatory region 642824	401 bp distal
Tssr64660	transcription start site region 64660	1824 bp downstream
Tssr64661	transcription start site region 64661	776 bp downstream
Tssr70792	transcription start site region 70792	887 bp upstream