rs50983795 SNP Detail

Summary

• ID
  rs50983795
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115222057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTATTTTCG TAGGCTGTTT
  GACTGAATGG GTGCCTTTTG CTTTTGGATA GGACTGTGTC ATGGATTCGG GTCAGCTAGG
  GAAATGAAAT ACAGTCTGGG TTTTTAAACA GGACACCAAC AGCCCAAGTT TTGTTTGTCT
  ATTTGTTTGT TTGTTTCTTT TTTGCAAGCC CTGGGATTTC GTATTTAACA GGAAATCGAC
  Y
  TAGATTATTA AGGAAAAGAA GTACTCAAAC ATCTGGAGGA ATACTGTTAC TTTTATTACG
  TCCTGACTTT AGAGTTCGTA AAGTTTTCCT CTGTAATTCT TACTGTTCTT GTGATTTTTT
  TTTTCTTAAA TTTGTAGTTA TTCATCCCCG TTGCTGCCCT TTGTTTTCTG TGTTTGTGTG
  TGTGTGTGCA CGCGCGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	SM/J
ss52214180	NES15331639	PERLEGEN	MM_PANEL2	f	SNP	T	T		C
ss323484731	CHEV_10_114823208	CHEVERUD	SCREENING_POP	f	SNP			T		C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	SM/J
rs50983795					SNP	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52214180	NES15331639	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115222057 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2206	CpG island 2206	145 bp distal
Rr402239	regulatory region 402239	1123 bp downstream
Rr439213	regulatory region 439213	1753 bp distal
Rr439214	regulatory region 439214	1838 bp distal
Rr439215	regulatory region 439215	1183 bp distal
Rr439216	regulatory region 439216	1172 bp distal
Rr439217	regulatory region 439217	909 bp distal
Thap2	THAP domain containing, apoptosis associated protein 2	1717 bp upstream
Tssr95814	transcription start site region 95814	1203 bp downstream
Tssr95815	transcription start site region 95815	1131 bp downstream
Tssr95816	transcription start site region 95816	1095 bp downstream
Tssr99330	transcription start site region 99330	1816 bp upstream
Tssr99331	transcription start site region 99331	1777 bp upstream
Tssr99332	transcription start site region 99332	1717 bp upstream
Tssr99333	transcription start site region 99333	1643 bp upstream
Tssr99334	transcription start site region 99334	1590 bp upstream
Tssr99335	transcription start site region 99335	1356 bp upstream
Zfc3h1	zinc finger, C3H1-type containing	within coordinates