rs50983911 SNP Detail

Summary

• ID
  rs50983911
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:98180830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGATCAA CAACTTAAAG
  GAAGGTTATC CCACACCCCA CTGGGCTTTT AATTTGCATC TCTCCCAGCC AAGACAAAGC
  TAGGAGCCAG TGATCACTTC GGTAGCAATG AAAAATCACA CCTGGAAATA TCTAGTCCCA
  CTCTCCCTGA GCCCAGTTAT CACGGGTTTC ACCTTGAAAA GGCTAAGTAG TGGAGGAGAT
  R
  AAGCCAGGTA ACTTGTAAGC ATTGTGCAAT GTGTACATTA ATATGTACAA TTTTATGGTT
  ACGTATGACT CAAAGAACAA ACTGAATCAC AATAAGACTT CATCCGGCGG TGAGCTCATC
  AGATCTTGCC AAAATCCTAC AGGGGCTGAA GTTTGTGTGC AAATTTCTCC TTACTGATTC
  TGTTCTCTTC CCCATTTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61199536	NES16709212	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs50983911					SNP	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61199536	NES16709212	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:98180830 () rs orientation: forward

Symbol	Name	Function Class
Antxr2	anthrax toxin receptor 2	1954 bp upstream
Cpgi16083	CpG island 16083	1411 bp distal
Gm42759	predicted gene 42759	1334 bp downstream
Rr615103	regulatory region 615103	1438 bp distal
Rr615104	regulatory region 615104	within coordinates
Tssr47435	transcription start site region 47435	1861 bp downstream
Tssr47436	transcription start site region 47436	1682 bp downstream
Tssr47437	transcription start site region 47437	1661 bp downstream
Tssr47438	transcription start site region 47438	329 bp upstream
Tssr51993	transcription start site region 51993	1979 bp upstream
Tssr51994	transcription start site region 51994	1933 bp upstream
Tssr51995	transcription start site region 51995	1717 bp upstream
Tssr51996	transcription start site region 51996	1655 bp upstream
Tssr51997	transcription start site region 51997	1624 bp upstream
Tssr51998	transcription start site region 51998	1583 bp upstream
Tssr51999	transcription start site region 51999	1550 bp upstream
Tssr52000	transcription start site region 52000	1522 bp upstream
Tssr52001	transcription start site region 52001	1508 bp upstream
Tssr52002	transcription start site region 52002	1484 bp upstream
Tssr52003	transcription start site region 52003	1448 bp upstream