rs50985146 SNP Detail

Summary

• ID
  rs50985146
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119575004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATCT GGGTCCAGTG TAGGTAGCTC
  Y
  GGCAGGGGTC AGGACATCCA AGAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss147341096	ENSMUSSNP2615674	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320477114	CHEV_2_119570259	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs50985146					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119575004 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12126	CpG island 12126	within coordinates
Gm75736	predicted gene, 75736	1328 bp upstream
Itpka	inositol 1,4,5-trisphosphate 3-kinase A	Intron
Rr563571	regulatory region 563571	838 bp distal
Rr563572	regulatory region 563572	1285 bp distal
Rr563573	regulatory region 563573	within coordinates
Rr563574	regulatory region 563574	163 bp proximal
Rr563575	regulatory region 563575	538 bp proximal
Tssr25827	transcription start site region 25827	1318 bp upstream