rs50985171 SNP Detail

Summary

• ID
  rs50985171
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:62022809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGTGTGT TCATGGTCAT
  GGTGTTCTTT TTAAAGCCCC GCCTCCACCC TTCCTCATAT GGAACACAAG CTTCCCTGGT
  GAGGGGAATT CCCTAACCCA GGCTTAGCTG GGTCTGAGAT TCTTGTTTTA TATCTATTGC
  CCTGTCTAAA ACTCTCACAG AAAAACCTAG AAACCCAGGT AGGGTTGGGG TGACACTTGG
  W
  CCGACTGCTC CTGCAAGGCC GGATGTCTCC AGCAGGGGGC GGCAAGCACC AAGCTTTGTT
  TGGCATGGGT CCCTACAGAG CCCTACCTCG GTTACTTTCT ATAACACGGG TAGACTTGTG
  ATACCATTCT CCTACAGGAG CCCTGGACTC AGCTACTTCT CCATGTAACC ATGGACTCTT
  AAGTCTTACT ATTAGTTTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147125554	ENSMUSSNP7216664	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50985171					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:62022809 () rs orientation: forward

Symbol	Name	Function Class
Rr215629	regulatory region 215629	within coordinates
Rr219987	regulatory region 219987	592 bp proximal
Rr228220	regulatory region 228220	within coordinates
Tspan15	tetraspanin 15	within coordinates
Tssr97791	transcription start site region 97791	456 bp downstream