rs50986351 SNP Detail

Summary

• ID
  rs50986351
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:115876468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGGGTGGCC TGCTAGAGAG AGGATCCCCC TCCTGATACA
  GCTCACTTTC TCAGATGCTA TGGTTCAGTC TTCCACTGAC CCAGGCTACT GAATGGCAGT
  Y
  CATTGCTGTG AGTTGGGGGG AAAAAGAAAT AAATACAGAC CTGATAAGAG TCTTAGAAAG
  CAGGCCATGG GGGTGCAGCC TTATAACCCC AATACTTAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147277476	ENSMUSSNP4865123	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321276779	CHEV_4_115691876	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50986351					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:115876468 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14625	CpG island 14625	1068 bp distal
Faah	fatty acid amide hydrolase	434 bp upstream
Rr91643	regulatory region 91643	933 bp proximal
Rr99792	regulatory region 99792	867 bp distal
Tssr38489	transcription start site region 38489	1988 bp downstream
Tssr42842	transcription start site region 42842	1507 bp upstream
Tssr42843	transcription start site region 42843	1408 bp upstream
Tssr42844	transcription start site region 42844	1237 bp upstream
Tssr42845	transcription start site region 42845	1208 bp upstream
Tssr42846	transcription start site region 42846	1171 bp upstream
Tssr42847	transcription start site region 42847	1140 bp upstream
Tssr42848	transcription start site region 42848	1124 bp upstream
Tssr42849	transcription start site region 42849	1095 bp upstream