rs50986901 SNP Detail

Summary

• ID
  rs50986901
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54388673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGAGAGG GGGGAGTAAC
  AAAAATACAA GAGAACAGCC AATGGTTACC TCAAATGTCT GGAACATGCT ATATTTGGAA
  CATCACTGTA CATTTTTTTA AAAAGAAGTA TTCATTGTTT ATCTGGAACT CAACTTTCAC
  TTGACTTCCT GAATTGTATC TCCATGCAAC CACGGGCATG CAGAGTTCTC AAGAAAAATA
  Y
  CACCTGGACC AGCAACCCAT TGTGAGCATC CATAAGGATG ATGCCCTGGA TGTTGGAGAG
  GAAGATTCAG AGGAAAAAGG ATGCTCACCT TCTCAGGGGC TACCACTTGG AAGAATCCTT
  GCACACACCC AGCCCCTGCT GACAGAAGTC ATTTTCAGAG CATCCAGGTC CCCAGCCCAG
  CCCTAGACTA AACCATCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62393818	NES17237184	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50986901					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62393818	NES17237184	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54388673 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
Gm62807	predicted gene, 62807	1937 bp upstream
Tcra	T cell receptor alpha chain	within coordinates
Tcrd	T cell receptor delta chain	within coordinates
Tssr125542	transcription start site region 125542	1930 bp upstream
Tssr125543	transcription start site region 125543	1974 bp upstream
Tssr125544	transcription start site region 125544	1990 bp upstream
Tssr128536	transcription start site region 128536	1976 bp upstream
Tssr128537	transcription start site region 128537	1957 bp upstream
Tssr128538	transcription start site region 128538	1936 bp upstream
Tssr128539	transcription start site region 128539	1873 bp upstream
Tssr128540	transcription start site region 128540	183 bp downstream