rs50987414 SNP Detail

Summary

• ID
  rs50987414
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:118664281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGATACA TGTTTCACAG
  AGAAGGGAAA GCCACCTACA GACTGGGGAC TTGGTGAAGC TAGTTGGCAG AGGCACTCAA
  ATAGTGTACC TAGAAAAGAG AACTGTCCCA GAAGCCAGGT GGACAGACAG CGAAGGGAAA
  GGGGCCGGGG TGGTAACTCC CCTTAGGAGT GTGTATAGCT GTGAGTGCCT GAACTAGCCT
  R
  TGGGTTTATG AACTACCTCC TTGAGCCACA ACCTACACTT GAATTGAAGC AGCATCAAGG
  TATCAAATAG CTAGCCTCAC CTGTGCACCA ATAAAGGAAG CACCATTAGG TCAGTGAGTA
  CAGACAGACA GACAGACTTT GATGAAGTTC AGGCAGGTGT GGATGGGCAC TCAAAACAGC
  ATATTCATTT ACATTCTAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss61228694	NES16859583	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs50987414					SNP	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61228694	NES16859583	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:118664281 () rs orientation: forward

Symbol	Name	Function Class
Itga9	integrin alpha 9	within coordinates
Tssr87654	transcription start site region 87654	279 bp upstream
Tssr87655	transcription start site region 87655	308 bp upstream