rs50987546 SNP Detail

Summary

• ID
  rs50987546
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:29979521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCCGGGA GTTAGAACTA
  AAATAAAGCA ATGTGCCAAC TCTAAGTGGA GCCAGAAAGA TGGGCAGCAC CAAACCCTGA
  AGCCAGCAGG AACGCAGGGG GAAAGCCTCT GCCAAGGGGG CGGGGCTTCC GGACCAGGCG
  GGCCTGGGAA GCCGCCTGAG GGAGCAAATA AAGAAGCGAT GGGAGGGACC GAGGCCCCGA
  G
  GCGGGACCAA GGTGGCAGAG AAGCCCGGAG TTGGGTAAAC AGGACGACCA GCCTCTCACC
  CGGTTCTGCA CAGTGTCCTC GGGAGCCGCC GCGAGTCGCG TCCGCCGCCG GAGGCAGAGC
  GGTGGGGCAG GAGGCGGGGA GGACTGGTTT CTCCGCGCCG GAACTCCCGC CATGACAGAG
  GACAGCTTTT CTATCGTGTC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148672275	ENSMUSSNP2725010	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs50987546					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29979521 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700020L13Rik	RIKEN cDNA 1700020L13 gene			937 bp upstream
Cpgi18786	CpG island 18786			within coordinates
Rr400235	regulatory region 400235			170 bp upstream
Rr644765	regulatory region 644765			within coordinates
Rr644766	regulatory region 644766			32 bp distal
Rr644767	regulatory region 644767			313 bp proximal
Rr644768	regulatory region 644768			802 bp proximal
Rr644769	regulatory region 644769			1749 bp proximal
Tssr65667	transcription start site region 65667			within coordinates
Tssr65668	transcription start site region 65668			90 bp upstream
Tssr65669	transcription start site region 65669			438 bp upstream
Tssr71721	transcription start site region 71721			239 bp downstream
Wdr62	WD repeat domain 62			Intron
				Noncoding-Transcript-Variant