rs50989736 SNP Detail

Summary

• ID
  rs50989736
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:117806500 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAACTAA GCCAGGCCAT
  GTGCATTTCT AAAGTTAGAC ACTGTTTTCT TAACTTCATT CCCCAACACT GGTAACATGT
  TGCTCAACTA ACGAAGAAAG CAAGACACCT CTTTCCTTGA CGTTTCCTCC TGAAGCCTGA
  GAGAACATTC TGGCAACTTC AACTATTCAT TCAGCAACAA CAGAAGGATG AGTACTGGAT
  Y
  CAAGGAGCTG AGACTGGCTG CATAAACTTC TACTCAGGCA AGCTGTTACT GTATCACCTC
  ATGACCCCAT CCTGTGCTAA ACCTTTCCAC TTGTCATTTT TCAGCTCCTC AGGCTTGCTT
  TGGGCCTCCC ACTGTCTCCA CTCATTAAAT GCCTCAGGCT ACTGACTCAA GCTCTAAGTC
  TTTGATGCCT CCAGCCCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52609121	NES15505556	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs50989736					SNP	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52609121	NES15505556	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:117806500 () rs orientation: forward

Symbol	Name	Function Class
Cdca7l	cell division cycle associated 7 like	709 bp upstream
Cpgi5229	CpG island 5229	490 bp proximal
Rr265167	regulatory region 265167	300 bp proximal
Tssr3984	transcription start site region 3984	675 bp upstream
Tssr115551	transcription start site region 115551	724 bp upstream
Tssr115552	transcription start site region 115552	929 bp upstream
Tssr115553	transcription start site region 115553	1081 bp upstream
Tssr115554	transcription start site region 115554	1108 bp upstream