rs50991632 SNP Detail

Summary

• ID
  rs50991632
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81341403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCCGCCA TGATGGTTAC
  AGACTAACCC TCTGAGTTTC GGAGGTAAAC GAACCAGTGA TAAAACACTT CCTTTACCCG
  AGTTGCTGTG GTCATGGAAT AGATCAGTGA CTGAAGCACT GTGCCAGCCC GATGGTGTAA
  ACAGTCCGTC CAAACCACCC ATTTCCTCCG CCCAGCCTCT TGAGGCCACA GCCTGGTTCT
  Y
  GAGATGTCTC AGCTAAGACA GGGCTGGGAC AGCATAGCAG GGCTTTTAGA AGCTCTCAGC
  TGCAATAAAG CCAGTGTCAA ATTCCCATAG CAGAGGTCAC CAGAGTTGAA TGTGAGTGAC
  ATTTGACCTG GCATCAAGCA TGGATTGTTG AAGGGGCTGA GACAAAAGTC TCCCCCAGAA
  TCTTATCTGC CCAGCATTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61292369	NES16908587	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50991632					SNP	C	C	C	C	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61292369	NES16908587	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81341403 () rs orientation: forward

Symbol	Name	Function Class
Gm16106	predicted gene 16106	803 bp downstream
Gm56270	predicted gene, 56270	851 bp downstream
Gna15	guanine nucleotide binding protein, alpha 15	within coordinates
Rr223625	regulatory region 223625	298 bp distal