rs50991898 SNP Detail

Summary

• ID
  rs50991898
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:88822567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCCAAAG GCAAAAGGCA
  CAGCAGCTGG CTATTTTGTG TTGGGCTCTA TGAAGGGATA CTTCACTTTG TAGGCAAAGG
  AAGTTAATAA AAAGGCATTG GGACATGGGT AAACGCCTTG AAAAGACTAA TGTAAGAGAA
  AGTGGATAAG GGAAAAAAAC AGAAAAGGCA ACAGCAGAGA CAGGCGCGGC AGGGGGCTCA
  R
  ACTGCTACTT TCTGTTTCCC CAGAATTCCA TAAACATCTT TACAAAATAA ATAAGTAAAT
  AAATAAATAA ATAGTGCAGC AGAAAGTATT GGGCCGGGAT TCAAATCAAT TAGCTCAGCT
  ACTGGCAGAC ATCAGCCATG CAGATGAACC ACCCAGATAT CACTAATTCA AGCAGACGCA
  AAACTAAATT AAGATAAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss148793249	ENSMUSSNP5645933	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs50991898					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:88822567 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi16030	CpG island 16030			184 bp proximal
Gm71600	predicted gene, 71600			1515 bp upstream
Grsf1	G-rich RNA sequence binding factor 1			Intron
				Noncoding-Transcript-Variant
Rr614150	regulatory region 614150			41 bp proximal
Rr614151	regulatory region 614151			948 bp proximal
Rr614152	regulatory region 614152			1249 bp proximal
Rr614153	regulatory region 614153			1310 bp proximal
Rr614154	regulatory region 614154			1453 bp proximal
Rr614155	regulatory region 614155			1526 bp proximal
Tssr51689	transcription start site region 51689			482 bp downstream
Tssr51690	transcription start site region 51690			834 bp downstream
Tssr51691	transcription start site region 51691			857 bp downstream
Tssr51692	transcription start site region 51692			905 bp downstream
Tssr51693	transcription start site region 51693			1403 bp downstream
Tssr51694	transcription start site region 51694			1427 bp downstream
Tssr51695	transcription start site region 51695			1484 bp downstream
Tssr51696	transcription start site region 51696			1518 bp downstream