rs50991939 SNP Detail

Summary

• ID
  rs50991939
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96319221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTGAAAA AATTAATTGC
  CTGCCCTTTA TGCCATTTGT CTTCGGCATG TGAACTGCAG TCTCAGAGTG GGAGGGGAGG
  AGAGAACGGC AGGCAGCTTA GAGCGGGGGT TCAACCACGC TGATCTCTTG GCTGCTCCTT
  TAACTCCTGT GGTGACGGAT CGGATCGGAG CATTAGTCTC TGGCATCAAA ACAGTCTCTC
  S
  GTCCATGTGA CCAGCACTGC CGTTGCCGCA CTGTAAAGCC CACAAGAATC GGCAGCCCAC
  AGACCCATCA GTGGAAGCTT TGTGTTTGCT TCGTGTGGGT TTGCTGGTGG CCTTTGGCAT
  AGCCACACGT TCAACACCTG CTGGAGCAAA ACAAACCATG CCCAGCATTG CTGTCGCATC
  TTGGCCTGTC CCTGTCCTGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61442169	NES16828186	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G		G	G	C	C		G
ss323108979	CHEV_9_96337587	CHEVERUD	SCREENING_POP	f	SNP										C					G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50991939					SNP	G	G	G	G	G	G	G	G	G	C	G	G	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61442169	NES16828186	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96319221 () rs orientation: forward

Symbol	Name	Function Class
BC043934	cDNA sequence BC043934	within coordinates
Cpgi22163	CpG island 22163	within coordinates
Cpgi22164	CpG island 22164	335 bp proximal
Gm50488	predicted gene, 50488	within coordinates
Gm68666	predicted gene, 68666	512 bp upstream
Rr368835	regulatory region 368835	828 bp upstream
Rr684963	regulatory region 684963	22 bp proximal
Rr684964	regulatory region 684964	523 bp proximal
Rr684965	regulatory region 684965	649 bp proximal
Tssr90963	transcription start site region 90963	993 bp downstream